• MPNST Drug-Synergy Prediction doi.org

    Deep-learning approaches for drug-response and synergistic drug prediction in malignant peripheral nerve sheath tumors, developed during a computational-biology internship at Pacific Northwest National Laboratory.

    Deep LearningDrug SynergyCancerPNNL
  • VIME (PyTorch) → Present github.com

    A PyTorch implementation of VIME (NeurIPS 2020) - self- and semi-supervised learning for tabular data via value imputation and mask estimation.

    PyTorchDeep LearningSelf-SupervisedTabular Data
  • ClinicalOmicsDB doi.org

    A database and web resource for exploring molecular associations of oncology drug responses in clinical trials. Co-lead author on the accompanying Nucleic Acids Research paper.

    GenomicsWeb AppOncologyRClinical Trials
  • DGCA → Present github.com

    An R package for differential gene correlation analysis of RNA-Seq data - identifying gene pairs whose co-expression changes across conditions.

    RBioinformaticsRNA-SeqStatistics