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MPNST Drug-Synergy Prediction → doi.org Deep-learning approaches for drug-response and synergistic drug prediction in malignant peripheral nerve sheath tumors, developed during a computational-biology internship at Pacific Northwest National Laboratory.
Deep LearningDrug SynergyCancerPNNL -
VIME (PyTorch) → Present github.com A PyTorch implementation of VIME (NeurIPS 2020) - self- and semi-supervised learning for tabular data via value imputation and mask estimation.
PyTorchDeep LearningSelf-SupervisedTabular Data -
ClinicalOmicsDB → doi.org A database and web resource for exploring molecular associations of oncology drug responses in clinical trials. Co-lead author on the accompanying Nucleic Acids Research paper.
GenomicsWeb AppOncologyRClinical Trials -
DGCA → Present github.com An R package for differential gene correlation analysis of RNA-Seq data - identifying gene pairs whose co-expression changes across conditions.
RBioinformaticsRNA-SeqStatistics